Journal Contributions
Lower-level publication types
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Journal Article [129877]
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Journal Issue [763]
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Other Journal Item [5552]
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Review Article [3954]
Recent Submissions
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The Chain of Processes Forming Porphyry Copper Deposits-An Invited Paper*
(2024)Economic GeologyPorphyry -related mineral deposits are giant geochemical anomalies in the Earth's crust with orders -of -magnitude differences in the content and proportion of the three main ore metals Cu, Au, and Mo. Deposit formation a few kilometers below surface is the product of a chain of geologic processes operating at different scales in space and time. This paper explores each process in this chain with regard to optimizing the chances of forming ...Journal Article -
Transgenerational effects of early life stress on the fecal microbiota in mice (vol 7, pg 670, 2024)
(2024)COMMUNICATIONS BIOLOGYOther Journal Item -
Psilocybin enhances insightfulness in meditation: a perspective on the global topology of brain imaging during meditation (Vol 14, 7211, 2024)
(2024)Scientific ReportsOther Journal Item -
Controlled Shaking of Trees With an Aerial Manipulator
(2024)IEEE-ASME TRANSACTIONS ON MECHATRONICSIn recent years, the fields of application of aerial manipulators have expanded, ranging from infrastructure inspection to physical interaction with flexible elements, such as branches and trees. This article presents the controlled shaking of a tree with an aerial manipulator. Our work aims at contributing to applications like the identification of tree parameters for environmental health monitoring or the collection of samples and fruits ...Journal Article -
Atomic Tailoring of Ubiquitin Side Chains Influences E2-Mediated Ubiquitin Chain Formation
(2024)Helvetica Chimica ActaUbiquitin (Ub) is a small, highly conserved protein essential for eukaryotic biology, and is unique in its formation of polyubiquitin chains by conjugation to one of its seven lysine side chains. Here we report that atomic tailoring of Ub side chains - i. e. the insertion, deletion, or replacement of specific atoms - has significant and unexpected consequences on the enzymatic conjugation of Ub oligomers by isopeptide bond formation ...Journal Article -
Improved resilience and proteostasis mediate longevity upon DAF-2 degradation in old age
(2024)GeroScienceLittle is known about the possibility of reversing age-related biological changes when they have already occurred. To explore this, we have characterized the effects of reducing insulin/IGF-1 signaling (IIS) during old age. Reduction of IIS throughout life slows age-related decline in diverse species, most strikingly in the nematode Caenorhabditis elegans. Here we show that even at advanced ages, auxin-induced degradation of DAF-2 in ...Journal Article -
Quantum squeezing in a nonlinear mechanical oscillator
(2024)Nature PhysicsMechanical degrees of freedom are natural candidates for continuous-variable quantum information processing and bosonic quantum simulations. However, these applications require the engineering of squeezing and nonlinearities in the quantum regime. Here we demonstrate squeezing below the zero-point fluctuations of a gigahertz-frequency mechanical resonator coupled to a superconducting qubit. This is achieved by parametrically driving the ...Journal Article -
Machine learning prediction of prime editing efficiency across diverse chromatin contexts
(2024)Nature BiotechnologyThe success of prime editing depends on the prime editing guide RNA (pegRNA) design and target locus. Here, we developed machine learning models that reliably predict prime editing efficiency. PRIDICT2.0 assesses the performance of pegRNAs for all edit types up to 15 bp in length in mismatch repair-deficient and mismatch repair-proficient cell lines and in vivo in primary cells. With ePRIDICT, we further developed a model that quantifies ...Journal Article -
Estrogenic, Genotoxic, and Antibacterial Effects of Chemicals from Cryogenically Milled Tire Tread
(2024)Environmental Toxicology and ChemistryTire and road wear particles (TRWP) contain complex mixtures of chemicals and release them to the environment, and potential toxic effects of these chemicals still need to be characterized. We used a standardized surrogate for TRWP, cryogenically milled tire tread (CMTT), to isolate and evaluate effects of tire-associated chemicals. We examined organic chemical mixtures extracted and leached from CMTT for the toxicity endpoints genotoxicity, ...Journal Article -
Evidence of cadmium transport via the phloem in cacao seedlings
(2024)Plant and SoilBackground and aims It is unclear if cadmium (Cd) is loaded into cacao beans directly from the roots and stem or rather via reallocation from leaves and stem via the phloem. Here, a split-root experiment with a stable isotope Cd-108 tracer was set up to determine the short-term circulation in the vegetative tissues of Cd in Theobroma cacao L. seedlings. Methods Roots of cacao seedlings were split into two parts, each growing in separate ...Journal Article -
Reasoning cartographic knowledge in deep learning-based map generalization with explainable AI
(2024)INTERNATIONAL JOURNAL OF GEOGRAPHICAL INFORMATION SCIENCECartographic map generalization involves complex rules, and a full automation has still not been achieved, despite many efforts over the past few decades. Pioneering studies show that some map generalization tasks can be partially automated by deep neural networks (DNNs). However, DNNs are still used as black-box models in previous studies. We argue that integrating explainable AI (XAI) into a DL-based map generalization process can give ...Journal Article -
Biodiversity reduces the advancement of leaf green-up with climate warming
(2024)NATURE CLIMATE CHANGEAnalysis of 393,139 forest inventory plots shows that increased biodiversity weakens the sensitivity of spring leaf-out dates to warming, possibly owing to diversity-driven changes in root depth and soil biogeophysical and biogeochemical processes, among potential mechanisms.Journal Article -
Interactions Enable Thouless Pumping in a Nonsliding Lattice
(2024)Physical Review XA topological "Thouless"pump represents the quantized motion of particles in response to a slow, cyclic modulation of external control parameters. The Thouless pump, like the quantum Hall effect, is of fundamental interest in physics, because it links physically measurable quantities, such as particle currents, to geometric properties of the experimental system, which can be robust against perturbations and, thus, technologically useful. ...Journal Article -
Solar prominence diagnostics and their associated estimated errors from 1D NLTE MII h&k modelling
(2024)Astronomy & AstrophysicsAims. We present further development of the rolling root mean square (rRMS) algorithm. These improvements consist of an increase in computational speed and an estimation of the uncertainty on the recovered diagnostics. This improved algorithm is named the cross root mean square (xRMS) algorithm. Methods. We used the quantile method to recover the statistics of the line profiles in order to study the evolution of the prominence observed ...Journal Article -
Fluctuation-induced spin nematic order in magnetic charge ice
(2024)Physical Review BA pyrochlore charge ice consisting of two magnetic cation types gives rise to a Heisenberg magnet with an interesting type of long-range correlated bond disorder. If the antiferromagnetic exchange among cations of the same type dominates over the interspecies exchange, closed antiferromagnetic chains following the fully packed loops of like cations emerge as nonlocal effective low-temperature degrees of freedom. Monte Carlo simulations ...Journal Article -
The Ethics of Automating Legal Actors
(2024)Transactions of the Association for Computational LinguisticsThe introduction of large public legal datasets has brought about a renaissance in legal NLP. Many of these datasets are composed of legal judgments—the product of judges deciding cases. Since ML algorithms learn to model the data they are trained on, several legal NLP models are models of judges. While some have argued for the automation of judges, in this position piece, we argue that automating the role of the judge raises difficult ...Journal Article -
Stabilization of Quantum-Confined Anisotropic CsPbI<sub>3</sub> Nanoplatelets by Solid-Phase Metal Iodide Crude Reaction for Color-Pure Red Emission
(2024)Advanced Optical MaterialsQuantum-confined CsPbI3 perovskite nanoplatelets (NPLs) are highly desirable for optoelectronic applications owing to their anisotropic electronic properties that substantially boost the light outcoupling efficiency in light-emitting diodes (LEDs). However, the structural instability of the emissive CsPbI3 phases makes it degrade rapidly to the non-emissive delta-phase under ambient conditions. Here, the study presents a synthetic approach ...Journal Article -
Biodiversity buffers the response of spring leaf unfolding to climate warming
(2024)NATURE CLIMATE CHANGEUnderstanding the sensitivity of spring leaf-out dates to temperature (ST) is integral to predicting phenological responses to climate warming and the consequences for global biogeochemical cycles. While variation in ST has been shown to be influenced by local climate adaptations, the impact of biodiversity remains unknown. Here we combine 393,139 forest inventory plots with satellite-derived ST across the northern hemisphere during ...Journal Article -
Collective flow of fermionic impurities immersed in a Bose-Einstein condensate
(2024)Nature PhysicsInteracting mixtures of bosons and fermions are ubiquitous in nature. They form the backbone of the standard model of physics, provide a framework for understanding quantum materials and are of technological importance in helium dilution refrigerators. However, the description of their coupled thermodynamics and collective behaviour is challenging. Bose-Fermi mixtures of ultracold atoms provide a platform to investigate their properties ...Journal Article -
High-Fidelity Velocity and Concentration Measurements of Turbulent Buoyant Jets
(2024)Nuclear TechnologyAccurate models of turbulent buoyant flows are essential for the design of the cooling circuit of nuclear reactors and passive safety systems. However, available models fail to fully capture the physics of turbulent mixing when buoyancy becomes predominant with respect to momentum. Therefore, high-fidelity experiments of well-controlled fundamental flows are needed to develop and validate more accurate models. We analyze experiments of ...Journal Article