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Machine learning prediction of prime editing efficiency across diverse chromatin contexts
Abstract
The success of prime editing depends on the prime editing guide RNA (pegRNA) design and target locus. Here, we developed machine learning models that reliably predict prime editing efficiency. PRIDICT2.0 assesses the performance of pegRNAs for all edit types up to 15 bp in length in mismatch repair-deficient and mismatch repair-proficient cell lines and in vivo in primary cells. With ePRIDICT, we further developed a model that quantifies how local chromatin environments impact prime editing rates. Show more
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publishedExternal links
Journal / series
Nature BiotechnologyPublisher
NatureSubject
Chromatin; Epigenetics; Genetic engineering; High-throughput screening; Machine learningFunding
185293 - Establishment of in vivo CRISPR-Cas base editor approaches to treat monogenetic liver diseases (SNF)
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