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dc.contributor.author
Schöbi, Dario
dc.contributor.author
Do, Cao-Tri
dc.contributor.author
Frässle, Stefan
dc.contributor.author
Tittgemeyer, Marc
dc.contributor.author
Heinzle, Jakob
dc.contributor.author
Stephan, Klaas
dc.date.accessioned
2021-10-07T16:28:11Z
dc.date.available
2021-09-30T02:41:13Z
dc.date.available
2021-10-07T16:28:11Z
dc.date.issued
2021-12-01
dc.identifier.issn
1053-8119
dc.identifier.issn
1095-9572
dc.identifier.other
10.1016/j.neuroimage.2021.118567
en_US
dc.identifier.uri
http://hdl.handle.net/20.500.11850/507705
dc.identifier.doi
10.3929/ethz-b-000507705
dc.description.abstract
Dynamic causal models (DCMs) of electrophysiological data allow, in principle, for inference on hidden, bulk synaptic function in neural circuits. The directed influences between the neuronal elements of modeled circuits are subject to delays due to the finite transmission speed of axonal connections. Ordinary differential equations are therefore not adequate to capture the ensuing circuit dynamics, and delay differential equations (DDEs) are required instead. Previous work has illustrated that the integration of DDEs in DCMs benefits from sophisticated integration schemes in order to ensure rigorous parameter estimation and correct model identification. However, integration schemes that have been proposed for DCMs either emphasize speed (at the possible expense of accuracy) or robustness (but with computational costs that are problematic in practice). In this technical note, we propose an alternative integration scheme that overcomes these shortcomings and offers high computational efficiency while correctly preserving the nature of delayed effects. This integration scheme is available as open-source code in the Translational Algorithms for Psychiatry-Advancing Science (TAPAS) toolbox and can be easily integrated into existing software (SPM) for the analysis of DCMs for electrophysiological data. While this paper focuses on its application to the convolution-based formalism of DCMs, the new integration scheme can be equally applied to more advanced formulations of DCMs (e.g. conductance based models). Our method provides a new option for electrophysiological DCMs that offers the speed required for scientific projects, but also the accuracy required for rigorous translational applications, e.g. in computational psychiatry.
en_US
dc.format
application/pdf
en_US
dc.language.iso
en
en_US
dc.publisher
Elsevier
en_US
dc.rights.uri
http://creativecommons.org/licenses/by/4.0/
dc.subject
Translational neuromodeling
en_US
dc.subject
Computational psychiatry
en_US
dc.subject
Generative model
en_US
dc.subject
Dynamic causal model
en_US
dc.subject
SPM
en_US
dc.subject
TAPAS
en_US
dc.title
Technical note: A fast and robust integrator of delay differential equations in DCM for electrophysiological data
en_US
dc.type
Journal Article
dc.rights.license
Creative Commons Attribution 4.0 International
dc.date.published
2021-09-13
ethz.journal.title
NeuroImage
ethz.journal.volume
244
en_US
ethz.journal.abbreviated
NeuroImage
ethz.pages.start
118567
en_US
ethz.size
11 p.
en_US
ethz.version.deposit
publishedVersion
en_US
ethz.identifier.wos
ethz.identifier.scopus
ethz.publication.place
Amsterdam
en_US
ethz.publication.status
published
en_US
ethz.leitzahl
ETH Zürich::00002 - ETH Zürich::00012 - Lehre und Forschung::00007 - Departemente::02140 - Dep. Inf.technologie und Elektrotechnik / Dep. of Inform.Technol. Electrical Eng.::02631 - Institut für Biomedizinische Technik / Institute for Biomedical Engineering::03955 - Stephan, Klaas E. / Stephan, Klaas E.
ethz.leitzahl.certified
ETH Zürich::00002 - ETH Zürich::00012 - Lehre und Forschung::00007 - Departemente::02140 - Dep. Inf.technologie und Elektrotechnik / Dep. of Inform.Technol. Electrical Eng.::02631 - Institut für Biomedizinische Technik / Institute for Biomedical Engineering::03955 - Stephan, Klaas E. / Stephan, Klaas E.
ethz.date.deposited
2021-09-30T02:41:20Z
ethz.source
SCOPUS
ethz.eth
yes
en_US
ethz.availability
Open access
en_US
ethz.rosetta.installDate
2022-01-31T14:53:24Z
ethz.rosetta.lastUpdated
2023-02-06T22:39:26Z
ethz.rosetta.versionExported
true
ethz.COinS
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