mask_clusters.nc : clusters generated by the K-means algorithm.

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fig1b_bathy.nc: bathrymetry provided by Walter Torres and James Hench. Note that the maximum depth is set to 100m.

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fig3a_wave_direction.txt : wave direction measurements, sampling began in 2005, with a two-hourly sampling interval from a bottom mounted wave-tide meter, in fore reef, washburn2021. Note that this data is also used in figure3c. This data can be found on the web page of Moorea Coral Reef LTER, with a dataset ID: knb-lter-mcr.30, link: http://mcrlter.msi.ucsb.edu/cgi-bin/showDataset.cgi?docid=knb-lter-mcr.30

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fig3b_wave_height.txt: significant wave height, sampling began in 2005, with a two-hourly sampling interval from a bottom mounted wave-tide meter, in fore reef, washburn2021. N
ote that this data is also used in figure3c.  This data can be found on the web page of Moorea Coral Reef LTER, with a dataset ID: knb-lter-mcr.30, link: http://mcrlter.msi.ucsb.edu/cgi-bin/showDataset.cgi?docid=knb-lter-mcr.30

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fig3d_TPAR_bnd.csv : wave measurements at the domain boundaries, provided by Walter Torres and James Hench. The first column is the date, second is the significant wave height, fourth is the wave direction.

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fig5*_measurements.csv: GPP, NPP, R and G measurements compiled from multiple studies, i.e. edmunds2012interactive, carpenter2015, wall2013situ, edmunds2012effect, edmunds2016size, evensen2017conspecific, edmunds2018colony.

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trajectoctories*.txt.zip: the paths of 9512 particles after being released, computed using particle tracking tool Ariane, with the modeled velocity fields, separately for three wave regimes.

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fig4*u_v.nc.zip: u and v velocities computed by the model for three wave regimes.

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carbonate_chemistry*surf.nc.zip: carbonate chemistry parameters (i.e. DIC, TA, pH, omega, pCO2) and oxygen at the surface, computed by the model for three wave regimes.